ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4iszA1 - ECOD Domain | ECOD

ECOD/Domains/e4iszA1

e4iszA1

UID: 000869378

PDB

Range: A:2-481
PDB: 4ISZ chain A(all domains)
UniProt: O59245 (all domains)
Gene: rtcB

Molecule: tRNA-splicing ligase RtcB

3D Structure

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Related Domains

Browse other domains in RtcB →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupHypothetical protein PH1602(304.106)

TT-groupHypothetical protein PH1602(304.106.1)

FFamilyRtcB(304.106.1.1)

Ligands

in contact, ≤ 4 Å

GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATEGAV
MANGANESE (II) IONMN
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

tRNA-splicing ligase RtcB

External Links

ECOD PDB View: 4ISZ RCSB PDB: 4ISZ PDBe: 4ISZ UniProt: O59245

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.