ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ycgC1 - ECOD Domain | ECOD

ECOD/Domains/e1ycgC1

e1ycgC1

UID: 000087849

PDB

Range: C:3-250
PDB: 1YCG chain C(all domains)
UniProt: Q9FDN7 (all domains)
Gene: fprA

Molecule: Nitric oxide reductase

3D Structure

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Related Domains

Browse other domains in ODP →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyODP(247.1.1.17)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247
Zinc ionZN
metal

+ 2 additives (1,2-ETHANEDIOL, Mu-oxo-diiron)

Pfam Families

ODP family beta lactamase

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 1YCG RCSB PDB: 1YCG PDBe: 1YCG UniProt: Q9FDN7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Mu-oxo-diironFEO

Shown in the structure viewer. Drug annotations from DrugDomain.