ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vmeB1 - ECOD Domain | ECOD

ECOD/Domains/e1vmeB1

e1vmeB1

UID: 000087857

PDB

Range: B:1-250
PDB: 1VME chain B(all domains)
UniProt: Q9WZL4 (all domains)
Gene: TM_0755

Molecule: Flavoprotein

3D Structure

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Related Domains

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Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyODP(247.1.1.17)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (1,2-ETHANEDIOL, Mu-oxo-diiron)

1,2-ETHANEDIOLEDO
Mu-oxo-diironFEO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

ODP family beta lactamase

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 1VME RCSB PDB: 1VME PDBe: 1VME UniProt: Q9WZL4

Downloads

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