ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1p4tA1 - ECOD Domain | ECOD

ECOD/Domains/e1p4tA1

e1p4tA1

UID: 000000879

RepresentativePDB

Range: A:1-155
PDB: 1P4T chain A(all domains)
UniProt: Q9RP17 (all domains)
Gene: nspA

Molecule: outer membrane protein NspA

3D Structure

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Related Domains

Browse other domains in Opacity →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupOMPA-like(5084.1)

TT-groupOMPA-like(5084.1.1)

FFamilyOpacity(5084.1.1.4)

Ligands

in contact, ≤ 4 Å

EthanolamineETA
drugDrugBank DB03994
Pentaethylene glycol monodecyl etherCXE

+ 1 additive (Sulfate ion)

Sulfate ion

Pfam Families

PF02462Opacity

Opacity family porin protein

ClanCL0193MBB

External Links

ECOD PDB View: 1P4T RCSB PDB: 1P4T PDBe: 1P4T UniProt: Q9RP17

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.