ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vm6A2 - ECOD Domain | ECOD

ECOD/Domains/e1vm6A2

e1vm6A2

UID: 000009120

RepresentativePDB

Range: A:1-96,A:183-214
PDB: 1VM6 chain A(all domains)
UniProt: Q9X1K8 (all domains)
Gene: dapB

Molecule: Dihydrodipicolinate reductase

3D Structure

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Related Domains

Browse other domains in DapB_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyDapB_N(2003.1.1.12)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer.

Pfam Families

Dihydrodipicolinate reductase, N-terminus

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1VM6 RCSB PDB: 1VM6 PDBe: 1VM6 UniProt: Q9X1K8

Downloads

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Drug annotations from DrugDomain.