ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vkfB1 - ECOD Domain | ECOD

ECOD/Domains/e1vkfB1

e1vkfB1

UID: 000093157

PDB

Range: B:1-172
PDB: 1VKF chain B(all domains)
UniProt: Q9X1F0 (all domains)
Gene: TM_1436

Molecule: glycerol uptake operon antiterminator-related protein

3D Structure

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Related Domains

Browse other domains in G3P_antiterm →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyG3P_antiterm(2002.1.1.130)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, Phosphate ion)

Citric acidCIT
DrugBank DB04272
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04309G3P_antiterm

Glycerol-3-phosphate responsive antiterminator

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1VKF RCSB PDB: 1VKF PDBe: 1VKF UniProt: Q9X1F0

Downloads

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