ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1g55A1 - ECOD Domain | ECOD

ECOD/Domains/e1g55A1

e1g55A1

UID: 000009371

RepresentativePDB

Range: A:2-391
PDB: 1G55 chain A(all domains)
UniProt: O14717 (all domains)
Gene: TRDMT1

Molecule: DNA CYTOSINE METHYLTRANSFERASE DNMT2

3D Structure

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Related Domains

Browse other domains in DNA_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyDNA_methylase(2003.1.5.1)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
S-adenosyl-l-homocysteineSAH

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL

Pfam Families

PF00145DNA_methylase

C-5 cytosine-specific DNA methylase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1G55 RCSB PDB: 1G55 PDBe: 1G55 UniProt: O14717

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.