ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1n8wA1 - ECOD Domain | ECOD

ECOD/Domains/e1n8wA1

e1n8wA1

UID: 000093965

PDB

Range: A:5-727
PDB: 1N8W chain A(all domains)
UniProt: P9WK16 (all domains)
Gene: glcB

Molecule: Probable malate synthase G

3D Structure

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Related Domains

Browse other domains in MS_TIM-barrel,MS_N,MSG_insertion,MS_C →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyMS_TIM-barrel,MS_N,MSG_insertion,MS_C(2002.1.1.61)

Ligands

in contact, ≤ 4 Å

Coenzyme ACOA
drugDrugBank DB01992
Magnesium ionMG
metal

+ 2 additives (D-Malic acid, Sulfate ion)

Pfam Families

PF01274MS_TIM-barrel

Malate synthase, TIM barrel domain

ClanCL0036TIM_barrel

Malate synthase, N-terminal domain

PF20658MSG_insertion

Malate synthase G, alpha-beta insertion domain

Malate synthase, C-terminal

External Links

ECOD PDB View: 1N8W RCSB PDB: 1N8W PDBe: 1N8W UniProt: P9WK16

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

D-Malic acid

DrugBank DB03499

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.