ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ydyB1 - ECOD Domain | ECOD

ECOD/Domains/e1ydyB1

e1ydyB1

UID: 000094000

PDB

Range: B:29-356
PDB: 1YDY chain B(all domains)
UniProt: P09394 (all domains)
Gene: glpQ

Molecule: Glycerophosphoryl diester phosphodiesterase

3D Structure

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Related Domains

Browse other domains in GDPD →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGDPD(2002.1.1.106)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Glycerophosphoryl diester phosphodiesterase family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1YDY RCSB PDB: 1YDY PDBe: 1YDY UniProt: P09394

Downloads

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