ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2oo3A1 - ECOD Domain | ECOD

ECOD/Domains/e2oo3A1

e2oo3A1

UID: 000009418

RepresentativePDB

Range: A:9-279
PDB: 2OO3 chain A(all domains)
UniProt: Q5ZVZ2 (all domains)
Gene: rlmJ

Molecule: Protein involved in catabolism of external DNA

3D Structure

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Related Domains

Browse other domains in RsmJ →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyRsmJ(2003.1.5.37)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Ribosomal RNA large subunit methyltransferase D, RlmJ

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2OO3 RCSB PDB: 2OO3 PDBe: 2OO3 UniProt: Q5ZVZ2

Downloads

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