ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1w9bM1 - ECOD Domain | ECOD

ECOD/Domains/e1w9bM1

e1w9bM1

UID: 000094966

PDB

Range: M:3-501
PDB: 1W9B chain M(all domains)
UniProt: P29736 (all domains)

Molecule: GLYCOSIDASE

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_1 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_1(2002.1.1.12)

Ligands

in contact, ≤ 4 Å

(1S,2S,3R,4S,5S)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL (1E)-2-PHENYL-N-(SULFOOXY)ETHANIMIDOTHIOATECGT
drugDrugBank DB04659
N-AcetylglucosamineNAG
drug

Pfam Families

PF00232Glyco_hydro_1

Glycosyl hydrolase family 1

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1W9B RCSB PDB: 1W9B PDBe: 1W9B UniProt: P29736

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB00141

Zinc ionZN

metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.