ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1ub0A1 - ECOD Domain | ECOD

ECOD/Domains/e1ub0A1

e1ub0A1

UID: 000009511

RepresentativePDB

Range: A:1-258
PDB: 1UB0 chain A(all domains)
UniProt: Q7SIA0 (all domains)

Molecule: Phosphomethylpyrimidine Kinase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Phos_pyr_kin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRibokinase-like(2003.6)

TT-groupRibokinase-like(2003.6.1)

FFamilyPhos_pyr_kin(2003.6.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (1,4-Dioxane, Glycerin, Sulfate ion)

1,4-DioxaneDIO
DrugBank DB03316
GlycerinGOL
DrugBank DB09462
Sulfate ion

Pfam Families

PF08543Phos_pyr_kin

Phosphomethylpyrimidine kinase

ClanCL0118Ribokinase

External Links

ECOD PDB View: 1UB0 RCSB PDB: 1UB0 PDBe: 1UB0 UniProt: Q7SIA0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.