ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ko0A2 - ECOD Domain | ECOD

ECOD/Domains/e1ko0A2

e1ko0A2

UID: 000095418

PDB

Range: A:32-278
PDB: 1KO0 chain A(all domains)
UniProt: P00861 (all domains)
Gene: lysA

Molecule: Diaminopimelate decarboxylase

3D Structure

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Related Domains

Browse other domains in Orn_Arg_deC_N →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOrn_Arg_deC_N(2002.1.1.101)

Ligands

in contact, ≤ 4 Å

LysineLYS
drugDrugBank DB00123
Pyridoxal phosphatePLP
drugDrugBank DB00114
D-Lysine

Pfam Families

PF02784Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1KO0 RCSB PDB: 1KO0 PDBe: 1KO0 UniProt: P00861

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03252within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.