ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3lg1A1 - ECOD Domain | ECOD

ECOD/Domains/e3lg1A1

e3lg1A1

UID: 000954328

PDB

Range: A:1-519
PDB: 3LG1 chain A(all domains)
UniProt: L0DSL2 (all domains)
Gene: nir

Molecule: Eight-heme nitrite reductase

3D Structure

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Related Domains

Browse other domains in Cytochrom_C552 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupMultiheme cytochromes(139)

HH-groupDi-heme elbow motif(139.2)

TT-groupDi-heme elbow motif(139.2.1)

FFamilyCytochrom_C552(139.2.1.1)

Ligands

in contact, ≤ 4 Å

Ferroheme CHEC
drugDrugBank DB03317
PentaglymePG6
drugDrugBank DB02580
Calcium ion

Pfam Families

PF02335Cytochrom_C552

Cytochrome c552

ClanCL0317Multiheme_cytos

External Links

ECOD PDB View: 3LG1 RCSB PDB: 3LG1 PDBe: 3LG1 UniProt: L0DSL2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Sodium ionNA

metal

Sulfite ionSO3

+ 1 additive (Tetraethylene glycol)

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.