ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1svdA2 - ECOD Domain | ECOD

ECOD/Domains/e1svdA2

e1svdA2

UID: 000095515

PDB

Range: A:144-460
PDB: 1SVD chain A(all domains)
UniProt: O85040 (all domains)
Gene: cbbL

Molecule: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit

3D Structure

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Related Domains

Browse other domains in RuBisCO_large →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRuBisCO_large(2002.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00016RuBisCO_large

Ribulose bisphosphate carboxylase large chain, catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1SVD RCSB PDB: 1SVD PDBe: 1SVD UniProt: O85040

Downloads

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