ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1yj5A1 - ECOD Domain | ECOD

ECOD/Domains/e1yj5A1

e1yj5A1

UID: 000009563

RepresentativePDB

Range: A:351-522
PDB: 1YJ5 chain A(all domains)
UniProt: Q9JLV6 (all domains)
Gene: Pnkp

Molecule: 5' polynucleotide kinase-3' phosphatase catalytic domain

3D Structure

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Related Domains

Browse other domains in AAA_33 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA_33(2004.1.1.208)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

AAA domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 1YJ5 RCSB PDB: 1YJ5 PDBe: 1YJ5 UniProt: Q9JLV6

Downloads

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