ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1r2qA1 - ECOD Domain | ECOD

ECOD/Domains/e1r2qA1

e1r2qA1

UID: 000009589

RepresentativePDB

Range: A:15-184
PDB: 1R2Q chain A(all domains)
UniProt: P20339 (all domains)
Gene: RAB5A

Molecule: Ras-related protein Rab-5A

3D Structure

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Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid guanylate esterGNP
drugDrugBank DB02082
Magnesium ionMG
metal

+ 1 additive (Glycerin)

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 1R2Q RCSB PDB: 1R2Q PDBe: 1R2Q UniProt: P20339

Downloads

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GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.