ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vf5B1 - ECOD Domain | ECOD

ECOD/Domains/e3vf5B1

e3vf5B1

UID: 000959367

PDB

Range: B:1-99
PDB: 3VF5 chain B(all domains)
UniProt: P03367 (all domains)
Gene: gag-pol

Molecule: Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

(3aS,5R,6aR)-hexahydro-2H-cyclopenta[b]furan-5-yl [(1S,2R)-1-benzyl-2-hydroxy-3-([(4-methoxyphenyl)sulfonyl]{[(2R)-5-oxopyrrolidin-2-yl]methyl}amino)propyl]carbamate031
Chloride ionCL
Sodium ionNA
metal

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3VF5 RCSB PDB: 3VF5 PDBe: 3VF5 UniProt: P03367

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.