ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3tofB1 - ECOD Domain | ECOD

ECOD/Domains/e3tofB1

e3tofB1

UID: 000959381

PDB

Range: B:1-99
PDB: 3TOF chain B(all domains)
UniProt: P03367 (all domains)
Gene: gag-pol

Molecule: Gag-Pol polyprotein

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

(S)-N-((1R,2S)-1-((2R,3R)-3-benzyloxiran-2-yl)-1-hydroxy-3-phenylpropan-2-yl)-3-methyl-2-(2-phenoxyacetamido)butanamide076

+ 2 additives (Acetate, Dimethyl sulfoxide)

AcetateACT
DrugBank DB14511
Dimethyl sulfoxide

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3TOF RCSB PDB: 3TOF PDBe: 3TOF UniProt: P03367

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.