ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4djqB1 - ECOD Domain | ECOD

ECOD/Domains/e4djqB1

e4djqB1

UID: 000959477

PDB

Range: B:1-99
PDB: 4DJQ chain B(all domains)
UniProt: Q90K99 (all domains)
Gene: pol

Molecule: Pol polyprotein

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

2-(2-oxoimidazolidin-1-yl)ethyl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl][(2S)-2-methylbutyl]amino}-1-phenylbutan-2-yl]carbamateM86

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 4DJQ RCSB PDB: 4DJQ PDBe: 4DJQ UniProt: Q90K99

Downloads

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Drug annotations from DrugDomain.