ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1udxA3 - ECOD Domain | ECOD

ECOD/Domains/e1udxA3

e1udxA3

UID: 000009609

RepresentativePDB

Range: A:157-336
PDB: 1UDX chain A(all domains)
UniProt: Q5SHE9 (all domains)
Gene: obg

Molecule: the GTP-binding protein Obg

3D Structure

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Related Domains

Browse other domains in MMR_HSR1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMMR_HSR1(2004.1.1.73)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, (4r)-2-Methylpentane-2,4-Diol)

AcetateACT
DrugBank DB14511
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer.

Pfam Families

PF01926MMR_HSR1

50S ribosome-binding GTPase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 1UDX RCSB PDB: 1UDX PDBe: 1UDX UniProt: Q5SHE9

Downloads

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Drug annotations from DrugDomain.