ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qerA4 - ECOD Domain | ECOD

ECOD/Domains/e3qerA4

e3qerA4

UID: 000964695

PDB

Range: A:1-375
PDB: 3QER chain A(all domains)
UniProt: Q38087 (all domains)
Gene: 43

Molecule: DNA polymerase

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_exo1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyDNA_pol_B_exo1(2484.1.1.34)

Ligands

in contact, ≤ 4 Å

dATPDTP
drugDrugBank DB03222within 5 Å only
Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03104DNA_pol_B_exo1

DNA polymerase family B, exonuclease domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 3QER RCSB PDB: 3QER PDBe: 3QER UniProt: Q38087

Downloads

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