ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1oc2B1 - ECOD Domain | ECOD

ECOD/Domains/e1oc2B1

e1oc2B1

UID: 000096685

PDB

Range: B:5-333
PDB: 1OC2 chain B(all domains)
UniProt: Q8GIP9 (all domains)
Gene: rmlB

Molecule: DTDP-GLUCOSE 4,6-DEHYDRATASE

3D Structure

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Related Domains

Browse other domains in Polysacc_synt_2, GDP_Man_Dehyd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyPolysacc_synt_2, GDP_Man_Dehyd(2003.1.1.141)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128
Thymidine-5'-diphospho-beta-D-xyloseTDX
drugDrugBank DB03161

Shown in the structure viewer.

Pfam Families

PF02719Polysacc_synt_2

Polysaccharide biosynthesis protein

ClanCL0063NADP_Rossmann

PF16363GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1OC2 RCSB PDB: 1OC2 PDBe: 1OC2 UniProt: Q8GIP9

Downloads

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Drug annotations from DrugDomain.