ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1kepB1 - ECOD Domain | ECOD

ECOD/Domains/e1kepB1

e1kepB1

UID: 000096689

PDB

Range: B:5-333
PDB: 1KEP chain B(all domains)
UniProt: P95780 (all domains)
Gene: rmlB

Molecule: dTDP-D-glucose 4,6-dehydratase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Polysacc_synt_2, GDP_Man_Dehyd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyPolysacc_synt_2, GDP_Man_Dehyd(2003.1.1.141)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128
Thymidine-5'-diphospho-beta-D-xyloseTDX
drugDrugBank DB03161

Pfam Families

PF02719Polysacc_synt_2

Polysaccharide biosynthesis protein

ClanCL0063NADP_Rossmann

PF16363GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1KEP RCSB PDB: 1KEP PDBe: 1KEP UniProt: P95780

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.