ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ketB1 - ECOD Domain | ECOD

ECOD/Domains/e1ketB1

e1ketB1

UID: 000096695

PDB

Range: B:5-333
PDB: 1KET chain B(all domains)
UniProt: P95780 (all domains)
Gene: rmlB

Molecule: dTDP-D-glucose 4,6-dehydratase

3D Structure

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Related Domains

Browse other domains in Polysacc_synt_2, GDP_Man_Dehyd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyPolysacc_synt_2, GDP_Man_Dehyd(2003.1.1.141)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128
Thymidine-5'- DiphosphateTYD
drugDrugBank DB03103

Shown in the structure viewer.

Pfam Families

PF02719Polysacc_synt_2

Polysaccharide biosynthesis protein

ClanCL0063NADP_Rossmann

PF16363GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1KET RCSB PDB: 1KET PDBe: 1KET UniProt: P95780

Downloads

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Drug annotations from DrugDomain.