ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vnjA1 - ECOD Domain | ECOD

ECOD/Domains/e3vnjA1

e3vnjA1

UID: 000971099

PDB

Range: A:0-288
PDB: 3VNJ chain A(all domains)
UniProt: B8I944 (all domains)
Gene: Ccel_0941

Molecule: Xylose isomerase domain protein TIM barrel

3D Structure

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Related Domains

Browse other domains in AP_endonuc_2 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyAP_endonuc_2(2002.1.1.60)

Ligands

in contact, ≤ 4 Å

PsicosePSJ
drugDrugBank DB15087
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01261AP_endonuc_2

Xylose isomerase-like TIM barrel

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3VNJ RCSB PDB: 3VNJ PDBe: 3VNJ UniProt: B8I944

Downloads

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