ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vajA1 - ECOD Domain | ECOD

ECOD/Domains/e3vajA1

e3vajA1

UID: 000971964

PDB

Range: A:148-228
PDB: 3VAJ chain A(all domains)
UniProt: P26368 (all domains)
Gene: U2AF2

Molecule: Splicing factor U2AF 65 kDa subunit

3D Structure

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Related Domains

Browse other domains in RRM_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRRM_1(304.9.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (1,4-Dioxane, Glycerin, Sulfate ion)

1,4-DioxaneDIO
DrugBank DB03316
GlycerinGOL
DrugBank DB09462
Sulfate ion

Pfam Families

RNA recognition motif

ClanCL0221RRM

External Links

ECOD PDB View: 3VAJ RCSB PDB: 3VAJ PDBe: 3VAJ UniProt: P26368

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.