ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4fkxB1 - ECOD Domain | ECOD

ECOD/Domains/e4fkxB1

e4fkxB1

UID: 000973893

PDB

Range: B:1-145
PDB: 4FKX chain B(all domains)
UniProt: Q381H3 (all domains)
Gene: Tb11.01.7800

Molecule: Nucleoside diphosphate kinase

3D Structure

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Related Domains

Browse other domains in NDK →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-DiphosphateCDP
drugDrugBank DB04555
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 4FKX RCSB PDB: 4FKX PDBe: 4FKX UniProt: Q381H3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.