ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vm6C2 - ECOD Domain | ECOD

ECOD/Domains/e1vm6C2

e1vm6C2

UID: 000097713

PDB

Range: C:1-96,C:183-214
PDB: 1VM6 chain C(all domains)
UniProt: Q9X1K8 (all domains)
Gene: dapB

Molecule: Dihydrodipicolinate reductase

3D Structure

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Related Domains

Browse other domains in DapB_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyDapB_N(2003.1.1.12)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128

+ 3 additives (Acetate, 1,2-ETHANEDIOL, Tetraethylene glycol)

AcetateACT
DrugBank DB14511

Pfam Families

Dihydrodipicolinate reductase, N-terminus

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1VM6 RCSB PDB: 1VM6 PDBe: 1VM6 UniProt: Q9X1K8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.