ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3t87A1 - ECOD Domain | ECOD

ECOD/Domains/e3t87A1

e3t87A1

UID: 000977399

PDB

Range: A:1-316
PDB: 3T87 chain A(all domains)
UniProt: P00800 (all domains)
Gene: npr

Molecule: Thermolysin

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_M4,Peptidase_M4_C →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M4,Peptidase_M4_C(2498.1.1.12)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
(2S)-2-({N-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-leucyl}amino)butanoic acidUBZ
Zinc ionZN

Pfam Families

PF01447Peptidase_M4

Thermolysin metallopeptidase, catalytic domain

ClanCL0126Peptidase_MA

PF02868Peptidase_M4_C

Thermolysin metallopeptidase, alpha-helical domain

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 3T87 RCSB PDB: 3T87 PDBe: 3T87 UniProt: P00800

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Dimethyl sulfoxide, Glycerin)

Dimethyl sulfoxideDMS
DrugBank DB01093
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.