ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mdhB2 - ECOD Domain | ECOD

ECOD/Domains/e4mdhB2

e4mdhB2

UID: 000098011

PDB

Range: B:1-153
PDB: 4MDH chain B(all domains)
UniProt: P11708 (all domains)
Gene: MDH1

Molecule: CYTOPLASMIC MALATE DEHYDROGENASE

3D Structure

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Related Domains

Browse other domains in Ldh_1_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyLdh_1_N(2003.1.1.2)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF00056Ldh_1_N

lactate/malate dehydrogenase, NAD binding domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4MDH RCSB PDB: 4MDH PDBe: 4MDH UniProt: P11708

Downloads

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Drug annotations from DrugDomain.