ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3vpbD1 - ECOD Domain | ECOD

ECOD/Domains/e3vpbD1

e3vpbD1

UID: 000980883

PDB

Range: D:87-281
PDB: 3VPB chain D(all domains)
UniProt: Q970U6 (all domains)
Gene: argX

Molecule: Putative acetylornithine deacetylase

3D Structure

Loading viewer...

Related Domains

Browse other domains in RimK →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRimK(206.1.3.21)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Glutamic acidGLU
drugDrugBank DB00142
Magnesium ion

Pfam Families

RimK-like ATP-grasp domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 3VPB RCSB PDB: 3VPB PDBe: 3VPB UniProt: Q970U6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.