ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vndD1 - ECOD Domain | ECOD

ECOD/Domains/e3vndD1

e3vndD1

UID: 000980955

PDB

Range: D:1-259
PDB: 3VND chain D(all domains)
UniProt: H1AFK5 (all domains)
Gene: trpA

Molecule: Tryptophan synthase alpha chain

3D Structure

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Related Domains

Browse other domains in Trp_syntA →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyTrp_syntA(2002.1.1.15)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL)

Sulfate ionSO4
DrugBank DB14546
3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOLPE8

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00290Trp_syntA

Tryptophan synthase alpha chain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3VND RCSB PDB: 3VND PDBe: 3VND UniProt: H1AFK5

Downloads

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