ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4f9tA1 - ECOD Domain | ECOD

ECOD/Domains/e4f9tA1

e4f9tA1

UID: 000981145

PDB

Range: A:0-66,A:159-220
PDB: 4F9T chain A(all domains)
UniProt: P27150 (all domains)
Gene: rplA

Molecule: 50S ribosomal protein L1

3D Structure

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Related Domains

Browse other domains in Ribosomal_L1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupa+b domain in Ribosomal protein L1(898)

HH-groupa+b domain in Ribosomal protein L1(898.1)

TT-groupa+b domain in Ribosomal protein L1(898.1.1)

FFamilyRibosomal_L1(898.1.1.1)

Ligands

in contact, ≤ 4 Å

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Sulfate ionSO4

Pfam Families

PF00687Ribosomal_L1

Ribosomal protein L1p/L10e family

External Links

ECOD PDB View: 4F9T RCSB PDB: 4F9T PDBe: 4F9T UniProt: P27150

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.