ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4e4hA2 - ECOD Domain | ECOD

ECOD/Domains/e4e4hA2

e4e4hA2

UID: 000982843

PDB

Range: A:504-632
PDB: 4E4H chain A(all domains)
UniProt: Q9H6W3 (all domains)
Gene: RIOX1

Molecule: Lysine-specific demethylase NO66

3D Structure

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Related Domains

Browse other domains in RIOX1_C_WH →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyRIOX1_C_WH(101.1.2.194)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21233WHD_RIOX1

Ribosomal oxygenase 1, C-terminal winged helix domain

ClanCL0123HTH

External Links

ECOD PDB View: 4E4H RCSB PDB: 4E4H PDBe: 4E4H UniProt: Q9H6W3

Downloads

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