ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4e0uA1 - ECOD Domain | ECOD

ECOD/Domains/e4e0uA1

e4e0uA1

UID: 000983055

PDB

Range: A:29-420
PDB: 4E0U chain A(all domains)
UniProt: D1D8L6 (all domains)
Gene: cdpNPT

Molecule: Cyclic dipeptide N-prenyltransferase

3D Structure

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Related Domains

Browse other domains in Trp_DMAT →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupPrenyltransferase-like(4194)

HH-groupPrenyltransferase-like(4194.1)

TT-groupPrenyltransferase-like(4194.1.1)

FFamilyTrp_DMAT(4194.1.1.2)

Ligands

in contact, ≤ 4 Å

ThiopyrophosphatePIS
drugDrugBank DB02423
(3S)-3-(1H-indol-3-ylmethyl)-3,4-dihydro-1H-1,4-benzodiazepine-2,5-dione0MV
Sodium ionNA

Pfam Families

PF11991Trp_DMAT

Tryptophan dimethylallyltransferase

External Links

ECOD PDB View: 4E0U RCSB PDB: 4E0U PDBe: 4E0U UniProt: D1D8L6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Imidazole, 1,2-ETHANEDIOL)

ImidazoleIMD
DrugBank DB03366
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.