ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4do5A2 - ECOD Domain | ECOD

ECOD/Domains/e4do5A2

e4do5A2

UID: 000983178

PDB

Range: A:18-309
PDB: 4DO5 chain A(all domains)
UniProt: P17050 (all domains)
Gene: NAGA

Molecule: Alpha-N-acetylgalactosaminidase

3D Structure

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Related Domains

Browse other domains in Melibiase_2 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyMelibiase_2(2002.1.1.186)

Ligands

in contact, ≤ 4 Å

MigalastatDGJ
drugDrugBank DB05018
N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Pfam Families

PF16499Melibiase_2

Alpha galactosidase A

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4DO5 RCSB PDB: 4DO5 PDBe: 4DO5 UniProt: P17050

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Citric acid, Glycerin)

Citric acidCIT
DrugBank DB04272
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.