ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3v3zM1 - ECOD Domain | ECOD

ECOD/Domains/e3v3zM1

e3v3zM1

UID: 000983559

PDB

Range: M:1-302
PDB: 3V3Z chain M(all domains)
UniProt: P0C0Y9 (all domains)
Gene: pufM

Molecule: Reaction center protein M chain

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
UbidecarenoneU10
drugDrugBank DB09270
Bacteriopheophytin a

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 3V3Z RCSB PDB: 3V3Z PDBe: 3V3Z UniProt: P0C0Y9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chloride ionCL

FE (III) IONFE

metal

HEPTANE-1,2,3-TRIOLHTO

SperoidenoneSPN

+ 3 additives (1,4-Dioxane, Dodecyldimethylamine N-oxide, Phosphate ion)

1,4-DioxaneDIO
DrugBank DB03316
Dodecyldimethylamine N-oxideLDA
DrugBank DB04147
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.