ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1o9bA1 - ECOD Domain | ECOD

ECOD/Domains/e1o9bA1

e1o9bA1

UID: 000098390

PDB

Range: A:107-287
PDB: 1O9B chain A(all domains)
UniProt: P0A6D5 (all domains)
Gene: ydiB

Molecule: HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB

3D Structure

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Related Domains

Browse other domains in SDH_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilySDH_C(2003.1.1.76)

Ligands

in contact, ≤ 4 Å

NADHNAI
drugDrugBank DB00157within 5 Å only

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Shikimate 5'-dehydrogenase C-terminal domain

External Links

ECOD PDB View: 1O9B RCSB PDB: 1O9B PDBe: 1O9B UniProt: P0A6D5

Downloads

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