ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1nytB1 - ECOD Domain | ECOD

ECOD/Domains/e1nytB1

e1nytB1

UID: 000098395

PDB

Range: B:102-271
PDB: 1NYT chain B(all domains)
UniProt: P15770 (all domains)
Gene: aroE

Molecule: Shikimate 5-dehydrogenase

3D Structure

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Related Domains

Browse other domains in Shikimate_DH,SDH_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyShikimate_DH,SDH_C(2003.1.1.25)

Ligands

in contact, ≤ 4 Å

Nicotinamide adenine dinucleotide phosphateNAP
drugDrugBank DB03461

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

PF01488Shikimate_DH

Shikimate / quinate 5-dehydrogenase

ClanCL0063NADP_Rossmann

Shikimate 5'-dehydrogenase C-terminal domain

External Links

ECOD PDB View: 1NYT RCSB PDB: 1NYT PDBe: 1NYT UniProt: P15770

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.