ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qgjC1 - ECOD Domain | ECOD

ECOD/Domains/e3qgjC1

e3qgjC1

UID: 000984156

PDB

Range: C:2-199
PDB: 3QGJ chain C(all domains)
UniProt: P00778 (all domains)
Gene: alpha-LP

Molecule: Alpha-lytic protease

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

trifluoroacetic acidTFA

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 3QGJ RCSB PDB: 3QGJ PDBe: 3QGJ UniProt: P00778

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.