ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ja1B1 - ECOD Domain | ECOD

ECOD/Domains/e4ja1B1

e4ja1B1

UID: 000985309

PDB

Range: B:83-244
PDB: 4JA1 chain B(all domains)
UniProt: P08254 (all domains)
Gene: MMP3

Molecule: Stromelysin-1

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACIDNGH
drugDrugBank DB08271
Calcium ionCA
metal
Chloride ion

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 4JA1 RCSB PDB: 4JA1 PDBe: 4JA1 UniProt: P08254

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

PLATINUM (II) IONPT

metal

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.