ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vq1B2 - ECOD Domain | ECOD

ECOD/Domains/e3vq1B2

e3vq1B2

UID: 000985684

PDB

Range: B:286-617
PDB: 3VQ1 chain B(all domains)
UniProt: Q9QUK6 (all domains)
Gene: Tlr4

Molecule: Toll-like receptor 4

3D Structure

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Related Domains

Browse other domains in LRR_8 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupLeucine-rich repeats(207.1)

TT-groupLeucine-rich repeats(207.1.1)

FFamilyLRR_8(207.1.1.24)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-4-O-phosphono-beta-D-glucopyranoseLP4
(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE

Pfam Families

Leucine rich repeat

ClanCL0022LRR

External Links

ECOD PDB View: 3VQ1 RCSB PDB: 3VQ1 PDBe: 3VQ1 UniProt: Q9QUK6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.