ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4iefB1 - ECOD Domain | ECOD

ECOD/Domains/e4iefB1

e4iefB1

UID: 000986159

PDB

Range: B:571-652
PDB: 4IEF chain B(all domains)
UniProt: P95493 (all domains)
Gene: rgpB

Molecule: Gingipain R2 Mature Domain

3D Structure

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Related Domains

Browse other domains in Peptidase_C25_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyPeptidase_C25_C(11.1.1.62)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03785Peptidase_C25_C

Peptidase family C25, C terminal ig-like domain

ClanCL0159E-set

External Links

ECOD PDB View: 4IEF RCSB PDB: 4IEF PDBe: 4IEF UniProt: P95493

Downloads

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