ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vkjB1 - ECOD Domain | ECOD

ECOD/Domains/e3vkjB1

e3vkjB1

UID: 000986400

PDB

Range: B:1-363
PDB: 3VKJ chain B(all domains)
UniProt: P61615 (all domains)
Gene: fni

Molecule: Isopentenyl-diphosphate delta-isomerase

3D Structure

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Related Domains

Browse other domains in FMN_dh →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyFMN_dh(2002.1.1.48)

Ligands

in contact, ≤ 4 Å

1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOLFNR

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

FMN-dependent dehydrogenase

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3VKJ RCSB PDB: 3VKJ PDBe: 3VKJ UniProt: P61615

Downloads

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