ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ykjB2 - ECOD Domain | ECOD

ECOD/Domains/e1ykjB2

e1ykjB2

UID: 000098643

PDB

Range: B:2001-2173,B:2276-2393
PDB: 1YKJ chain B(all domains)
UniProt: P20586 (all domains)
Gene: pobA

Molecule: P-hydroxybenzoate hydroxylase

3D Structure

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Related Domains

Browse other domains in FAD_binding_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyFAD_binding_3(2003.1.2.15)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
4-hydroxybenzoic acidPHB
drugDrugBank DB04242

Pfam Families

PF01494FAD_binding_3

FAD binding domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1YKJ RCSB PDB: 1YKJ PDBe: 1YKJ UniProt: P20586

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Pyrosulfate

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.