ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3t9gB1 - ECOD Domain | ECOD

ECOD/Domains/e3t9gB1

e3t9gB1

UID: 000987458

PDB

Range: B:-2-193
PDB: 3T9G chain B(all domains)
UniProt: B9MKT4 (all domains)
Gene: Athe_1854

Molecule: Pectate lyase

3D Structure

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Related Domains

Browse other domains in Pectate_lyase →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyPectate_lyase(207.2.1.9)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL
(4R)-2-METHYLPENTANE-2,4-DIOLMRD

Pfam Families

PF03211Pectate_lyase

Pectate lyase

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 3T9G RCSB PDB: 3T9G PDBe: 3T9G UniProt: B9MKT4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sodium ionNA

metal

+ 5 additives (Acetate, Glycerin, (4r)-2-Methylpentane-2,4-Diol, …)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Phosphate ionPO4
DrugBank DB14523
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.