ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ubtA1 - ECOD Domain | ECOD

ECOD/Domains/e3ubtA1

e3ubtA1

UID: 000988640

PDB

Range: A:1-328
PDB: 3UBT chain A(all domains)
UniProt: P20589 (all domains)
Gene: haeIIIM

Molecule: Modification methylase HaeIII

3D Structure

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Related Domains

Browse other domains in DNA_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyDNA_methylase(2003.1.5.1)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171
Chloride ionCL

+ 1 additive (Nonaethylene glycol)

Nonaethylene glycol2PE

Pfam Families

PF00145DNA_methylase

C-5 cytosine-specific DNA methylase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3UBT RCSB PDB: 3UBT PDBe: 3UBT UniProt: P20589

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.