ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ydaB1 - ECOD Domain | ECOD

ECOD/Domains/e2ydaB1

e2ydaB1

UID: 000990140

PDB

Range: B:1-292
PDB: 2YDA chain B(all domains)
UniProt: O54288 (all domains)

Molecule: 2-KETO-3-DEOXY GLUCONATE ALDOLASE

3D Structure

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Related Domains

Browse other domains in DHDPS →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyDHDPS(2002.1.1.29)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Isopropyl alcohol)

GlycerinGOL
DrugBank DB09462
Isopropyl alcoholIPA
DrugBank DB02325

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Dihydrodipicolinate synthetase family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 2YDA RCSB PDB: 2YDA PDBe: 2YDA UniProt: O54288

Downloads

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