ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2lybA1 - ECOD Domain | ECOD

ECOD/Domains/e2lybA1

e2lybA1

UID: 000990834

PDB

Range: A:2-132
PDB: 2LYB chain A(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: Matrix protein p17

3D Structure

Loading viewer...

Related Domains

Browse other domains in Gag_p17 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupRetroviral matrix proteins(612)

HH-groupRetroviral matrix proteins(612.1)

TT-groupRetroviral matrix proteins(612.1.1)

FFamilyGag_p17(612.1.1.1)

Ligands

in contact, ≤ 4 Å

O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine8SP

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00540Gag_p17

gag gene protein p17 (matrix protein)

ClanCL0074Matrix

External Links

ECOD PDB View: 2LYB RCSB PDB: 2LYB PDBe: 2LYB UniProt: P12497

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure